HL_5IMQ_075

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_075 not in the Motif Atlas

Geometric match to HL_7RQB_071

Geometric discrepancy: 0.2678

The information below is about HL_7RQB_071

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

5IMQ|1|D|C|1533
5IMQ|1|D|G|1534
5IMQ|1|D|U|1535
5IMQ|1|D|A|1536
5IMQ|1|D|C|1537
5IMQ|1|D|G|1538

Current chains

Chain D

23S ribosomal RNA

Nearby chains