HL_5IMQ_080

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_080 not in the Motif Atlas

Homologous match to HL_7RQB_044

Geometric discrepancy: 0.2508

The information below is about HL_7RQB_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76539.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5IMQ|1|D|C|1752
5IMQ|1|D|G|1753
5IMQ|1|D|C|1754
5IMQ|1|D|A|1755
5IMQ|1|D|G|1756

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L19