HL_5IMQ_084

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUAACUAUAACG

Length

13 nucleotides

Bulged bases

5IMQ|1|D|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_084 not in the Motif Atlas

Geometric match to HL_5UD5_001

Geometric discrepancy: 0.2285

The information below is about HL_5UD5_001

Detailed Annotation

tRNA D-loop

Broad Annotation

tRNA D-loop

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

5IMQ|1|D|C|1909
5IMQ|1|D|G|1910
5IMQ|1|D|U|1911
5IMQ|1|D|A|1912
5IMQ|1|D|A|1913
5IMQ|1|D|C|1914
5IMQ|1|D|U|1915
5IMQ|1|D|A|1916
5IMQ|1|D|U|1917
5IMQ|1|D|A|1918
5IMQ|1|D|A|1919
5IMQ|1|D|C|1920
5IMQ|1|D|G|1921

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain A

Small subunit ribosomal RNA; SSU rRNA