HL_5IMQ_087

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

5IMQ|1|D|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_087 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.3003

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

5IMQ|1|D|C|2143
5IMQ|1|D|U|2144
5IMQ|1|D|C|2145
5IMQ|1|D|C|2146
5IMQ|1|D|G|2147
5IMQ|1|D|G|2148

Current chains

Chain D

23S ribosomal RNA

Nearby chains