HL_5IMQ_089
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 5IMQ|1|D|G|2250
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IMQ_089 not in the Motif Atlas
- Homologous match to HL_7RQB_053
- Geometric discrepancy: 0.1868
- The information below is about HL_7RQB_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5IMQ|1|D|C|2248
5IMQ|1|D|U|2249
5IMQ|1|D|G|2250
5IMQ|1|D|G|2251
5IMQ|1|D|G|2252
5IMQ|1|D|G|2253
5IMQ|1|D|C|2254
5IMQ|1|D|G|2255
5IMQ|1|D|G|2256
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain 4
- Transfer RNA; tRNA
- Chain B
- Elongation factor 4
- Chain i
- 50S ribosomal protein L16
- Chain s
- 50S ribosomal protein L27
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