HL_5IMQ_091
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGACGGAAAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IMQ_091 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3453
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5IMQ|1|D|G|2303
5IMQ|1|D|G|2304
5IMQ|1|D|A|2305
5IMQ|1|D|C|2306
5IMQ|1|D|G|2307
5IMQ|1|D|G|2308
5IMQ|1|D|A|2309
5IMQ|1|D|A|2310
5IMQ|1|D|A|2311
5IMQ|1|D|U|2312
5IMQ|1|D|C|2313
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain 4
- Transfer RNA; tRNA
- Chain E
- 5S ribosomal RNA; 5S rRNA
- Chain d
- 50S ribosomal protein L5
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