HL_5IMQ_095

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

5IMQ|1|D|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_095 not in the Motif Atlas

Homologous match to HL_4WF9_055

Geometric discrepancy: 0.1734

The information below is about HL_4WF9_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5IMQ|1|D|C|2404
5IMQ|1|D|G|2405
5IMQ|1|D|U|2406
5IMQ|1|D|G|2407
5IMQ|1|D|U|2408
5IMQ|1|D|G|2409
5IMQ|1|D|G|2410
5IMQ|1|D|A|2411
5IMQ|1|D|A|2412
5IMQ|1|D|G|2413

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L15

Chain v

50S ribosomal protein L31