HL_5IMQ_103

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

5IMQ|1|D|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_103 not in the Motif Atlas

Homologous match to HL_4WF9_064

Geometric discrepancy: 0.1966

The information below is about HL_4WF9_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5IMQ|1|D|G|2819
5IMQ|1|D|A|2820
5IMQ|1|D|A|2821
5IMQ|1|D|G|2822
5IMQ|1|D|A|2823
5IMQ|1|D|C|2824
5IMQ|1|D|C|2825
5IMQ|1|D|A|2826
5IMQ|1|D|C|2827

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain j

50S ribosomal protein L17

Chain l

50S ribosomal protein L19