3D structure

PDB id
5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosome bound to cofactor at 3.8 angstrom resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGCGCUUUUGCGCG
Length
14 nucleotides
Bulged bases
5IMQ|1|D|U|161, 5IMQ|1|D|U|162, 5IMQ|1|D|U|163, 5IMQ|1|D|U|164
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5IMQ|1|D|C|151
5IMQ|1|D|G|152
5IMQ|1|D|C|153
5IMQ|1|D|G|154
5IMQ|1|D|C|155
5IMQ|1|D|U|161
5IMQ|1|D|U|162
5IMQ|1|D|U|163
5IMQ|1|D|U|164
5IMQ|1|D|G|171
5IMQ|1|D|C|172
5IMQ|1|D|G|173
5IMQ|1|D|C|174
5IMQ|1|D|G|175

Current chains

Chain D
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:

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