HL_5IMQ_114
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUUAAUAUUC
- Length
- 10 nucleotides
- Bulged bases
- 5IMQ|1|D|U|1391, 5IMQ|1|D|U|1394, 5IMQ|1|D|U|1396, 5IMQ|1|D|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IMQ_114 not in the Motif Atlas
- Homologous match to HL_5J7L_168
- Geometric discrepancy: 0.2733
- The information below is about HL_5J7L_168
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81545.2
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5IMQ|1|D|G|1389
5IMQ|1|D|U|1390
5IMQ|1|D|U|1391
5IMQ|1|D|A|1392
5IMQ|1|D|A|1393
5IMQ|1|D|U|1394
5IMQ|1|D|A|1395
5IMQ|1|D|U|1396
5IMQ|1|D|U|1397
5IMQ|1|D|C|1398
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain p
- 50S ribosomal protein L23
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