HL_5IMQ_116

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGGUGCAAGCCCC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|D|G|1860
5IMQ|1|D|G|1861
5IMQ|1|D|G|1862
5IMQ|1|D|G|1863
5IMQ|1|D|U|1864
5IMQ|1|D|G|1869
5IMQ|1|D|C|1870
5IMQ|1|D|A|1871
5IMQ|1|D|A|1872
5IMQ|1|D|G|1878
5IMQ|1|D|C|1879
5IMQ|1|D|C|1880
5IMQ|1|D|C|1881
5IMQ|1|D|C|1882

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L1

Chain v

50S ribosomal protein L31