HL_5IMQ_118

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

5IMQ|1|D|A|2305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|D|G|2304
5IMQ|1|D|A|2305
5IMQ|1|D|C|2306
5IMQ|1|D|G|2307
5IMQ|1|D|G|2308
5IMQ|1|D|A|2309
5IMQ|1|D|A|2310
5IMQ|1|D|A|2311
5IMQ|1|D|U|2312

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain d

50S ribosomal protein L5