HL_5IMQ_125

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

5IMQ|1|D|U|827, 5IMQ|1|D|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_125 not in the Motif Atlas

Homologous match to HL_7A0S_024

Geometric discrepancy: 0.3138

The information below is about HL_7A0S_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

5IMQ|1|D|U|826
5IMQ|1|D|U|827
5IMQ|1|D|U|828
5IMQ|1|D|A|829
5IMQ|1|D|G|830
5IMQ|1|D|G|831

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L15