HL_5IMQ_126

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAUGGACGAG

Length

11 nucleotides

Bulged bases

5IMQ|1|D|A|1453, 5IMQ|1|D|U|1454, 5IMQ|1|D|A|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_126 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.5889

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_00824.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5IMQ|1|D|C|1450
5IMQ|1|D|C|1451
5IMQ|1|D|A|1453
5IMQ|1|D|U|1454
5IMQ|1|D|G|1455
5IMQ|1|D|G|1456
5IMQ|1|D|A|1457
5IMQ|1|D|C|1458
5IMQ|1|D|G|1459
5IMQ|1|D|A|1460
5IMQ|1|D|G|1461

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain j

50S ribosomal protein L17