HL_5IMQ_129

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAAGCAUCUAA

Length

13 nucleotides

Bulged bases

5IMQ|1|D|A|2749, 5IMQ|1|D|A|2750, 5IMQ|1|D|G|2751, 5IMQ|1|D|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|D|U|2746
5IMQ|1|D|G|2747
5IMQ|1|D|A|2748
5IMQ|1|D|A|2749
5IMQ|1|D|A|2750
5IMQ|1|D|G|2751
5IMQ|1|D|C|2752
5IMQ|1|D|A|2753
5IMQ|1|D|U|2754
5IMQ|1|D|C|2755
5IMQ|1|D|U|2756
5IMQ|1|D|A|2757
5IMQ|1|D|A|2758

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L36

Chain e

50S ribosomal protein L6

Chain f

50S ribosomal protein L13