HL_5IQR_013

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

5IQR|1|1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IQR_013 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.1127

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5IQR|1|1|G|410
5IQR|1|1|G|411
5IQR|1|1|A|412
5IQR|1|1|C|413
5IQR|1|1|C|414
5IQR|1|1|A|415
5IQR|1|1|U|416
5IQR|1|1|C|417

Current chains

Chain 1

LSU rRNA

Nearby chains

Chain L

50S ribosomal protein L15