HL_5IQR_023

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

5IQR|1|1|A|781, 5IQR|1|1|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IQR_023 not in the Motif Atlas

Geometric match to HL_2NUE_001

Geometric discrepancy: 0.3237

The information below is about HL_2NUE_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

5IQR|1|1|U|779
5IQR|1|1|G|780
5IQR|1|1|A|781
5IQR|1|1|A|782
5IQR|1|1|A|783
5IQR|1|1|G|784
5IQR|1|1|G|785

Current chains

Chain 1

LSU rRNA

Nearby chains

Chain B

50S ribosomal protein L2