HL_5IQR_040

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

5IQR|1|1|A|1616

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IQR_040 not in the Motif Atlas

Homologous match to HL_5J7L_173

Geometric discrepancy: 0.0836

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5IQR|1|1|C|1612
5IQR|1|1|G|1613
5IQR|1|1|A|1614
5IQR|1|1|C|1615
5IQR|1|1|A|1616
5IQR|1|1|C|1617
5IQR|1|1|6MZ|1618
5IQR|1|1|G|1619

Current chains

Chain 1

LSU rRNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain d

50S ribosomal protein L34