HL_5IQR_043

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

5IQR|1|1|U|1729, 5IQR|1|1|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IQR_043 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.2996

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5IQR|1|1|C|1727
5IQR|1|1|C|1728
5IQR|1|1|U|1729
5IQR|1|1|C|1730
5IQR|1|1|G|1731
5IQR|1|1|C|1732
5IQR|1|1|G|1733

Current chains

Chain 1

LSU rRNA

Nearby chains