HL_5IQR_053

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

5IQR|1|1|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IQR_053 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.0954

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IQR|1|1|C|2248
5IQR|1|1|U|2249
5IQR|1|1|G|2250
5IQR|1|1|OMG|2251
5IQR|1|1|G|2252
5IQR|1|1|G|2253
5IQR|1|1|C|2254
5IQR|1|1|G|2255
5IQR|1|1|G|2256

Current chains

Chain 1

LSU rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27