HL_5IQR_064

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IQR_064 not in the Motif Atlas

Geometric match to HL_7A0S_063

Geometric discrepancy: 0.1038

The information below is about HL_7A0S_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

5IQR|1|1|C|2658
5IQR|1|1|G|2659
5IQR|1|1|A|2660
5IQR|1|1|G|2661
5IQR|1|1|A|2662
5IQR|1|1|G|2663

Current chains

Chain 1

LSU rRNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain F

50S ribosomal protein L6