HL_5IQR_071

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAGCUUGCUU

Length

10 nucleotides

Bulged bases

5IQR|1|2|U|85

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IQR_071 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2467

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

5IQR|1|2|A|80
5IQR|1|2|A|81
5IQR|1|2|G|82
5IQR|1|2|C|83
5IQR|1|2|U|84
5IQR|1|2|U|85
5IQR|1|2|G|86
5IQR|1|2|C|87
5IQR|1|2|U|88
5IQR|1|2|U|89

Current chains

Chain 2

SSU rRNA

Nearby chains

Chain 8

GTP pyrophosphokinase