HL_5IQR_082

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCAGCC(G7M)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IQR_082 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2173

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

5IQR|1|2|G|521
5IQR|1|2|C|522
5IQR|1|2|A|523
5IQR|1|2|G|524
5IQR|1|2|C|525
5IQR|1|2|C|526
5IQR|1|2|G7M|527
5IQR|1|2|C|528

Current chains

Chain 2

SSU rRNA

Nearby chains

Chain 7

mRNA

Chain q

30S ribosomal protein S12