HL_5IQR_097

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IQR_097 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.1088

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5IQR|1|2|C|1314
5IQR|1|2|U|1315
5IQR|1|2|G|1316
5IQR|1|2|C|1317
5IQR|1|2|A|1318
5IQR|1|2|A|1319
5IQR|1|2|C|1320
5IQR|1|2|U|1321
5IQR|1|2|C|1322
5IQR|1|2|G|1323

Current chains

Chain 2

SSU rRNA

Nearby chains

Chain r

30S ribosomal protein S13

Chain s

30S ribosomal protein S14

Chain x

30S ribosomal protein S19