HL_5IQR_100

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

G(2MG)G(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

5IQR|1|2|G|1517

QA status

Modified nucleotides: 2MG, MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IQR_100 not in the Motif Atlas

Homologous match to HL_4LFB_032

Geometric discrepancy: 0.1405

The information below is about HL_4LFB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5IQR|1|2|G|1515
5IQR|1|2|2MG|1516
5IQR|1|2|G|1517
5IQR|1|2|MA6|1518
5IQR|1|2|MA6|1519
5IQR|1|2|C|1520

Current chains

Chain 2

SSU rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA