HL_5IQR_117

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCCUUGAGG

Length

9 nucleotides

Bulged bases

5IQR|1|2|U|842

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IQR_117 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2787

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

5IQR|1|2|C|839
5IQR|1|2|C|840
5IQR|1|2|C|841
5IQR|1|2|U|842
5IQR|1|2|U|843
5IQR|1|2|G|844
5IQR|1|2|A|845
5IQR|1|2|G|846
5IQR|1|2|G|847

Current chains

Chain 2

SSU rRNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain w

30S ribosomal protein S18