HL_5IT9_002

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAUUUAUACAG

Length

12 nucleotides

Bulged bases

5IT9|1|2|U|74, 5IT9|1|2|U|77

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT9_002 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.2468

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

5IT9|1|2|C|70
5IT9|1|2|A|71
5IT9|1|2|A|72
5IT9|1|2|U|73
5IT9|1|2|U|74
5IT9|1|2|U|75
5IT9|1|2|A|76
5IT9|1|2|U|77
5IT9|1|2|A|78
5IT9|1|2|C|79
5IT9|1|2|A|80
5IT9|1|2|G|81

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Ribosomal protein eS6

Chain Y

Ribosomal protein eS24