HL_5IT9_004

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

5IT9|1|2|U|193

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT9_004 not in the Motif Atlas

Homologous match to HL_4V88_189

Geometric discrepancy: 0.5951

The information below is about HL_4V88_189

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5IT9|1|2|C|189
5IT9|1|2|C|190
5IT9|1|2|U|191
5IT9|1|2|U|192
5IT9|1|2|U|193
5IT9|1|2|G|194

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

Ribosomal protein eS8