HL_5IT9_011

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

5IT9|1|2|A|415

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT9_011 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.2177

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5IT9|1|2|C|413
5IT9|1|2|C|414
5IT9|1|2|A|415
5IT9|1|2|A|416
5IT9|1|2|G|417
5IT9|1|2|G|418

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Ribosomal protein eS6