HL_5IT9_014

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT9_014 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1209

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5IT9|1|2|A|519
5IT9|1|2|A|520
5IT9|1|2|U|521
5IT9|1|2|G|522
5IT9|1|2|U|523
5IT9|1|2|A|524
5IT9|1|2|A|525
5IT9|1|2|A|526
5IT9|1|2|U|527
5IT9|1|2|A|528
5IT9|1|2|C|529
5IT9|1|2|C|530
5IT9|1|2|U|531

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Ribosomal protein uS4

Chain Y

Ribosomal protein eS24