HL_5IT9_018

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT9_018 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.3808

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

5IT9|1|2|C|777
5IT9|1|2|G|778
5IT9|1|2|A|779
5IT9|1|2|A|780
5IT9|1|2|A|781
5IT9|1|2|G|782

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain Y

Ribosomal protein eS24