HL_5IT9_020

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUGUCAGAGGUGAAAUUCUUGGAUUUA

Length

27 nucleotides

Bulged bases

5IT9|1|2|G|912

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IT9|1|2|U|892
5IT9|1|2|U|893
5IT9|1|2|G|894
5IT9|1|2|U|895
5IT9|1|2|C|896
5IT9|1|2|A|897
5IT9|1|2|G|898
5IT9|1|2|A|899
5IT9|1|2|G|900
5IT9|1|2|G|901
5IT9|1|2|U|902
5IT9|1|2|G|903
5IT9|1|2|A|904
5IT9|1|2|A|905
5IT9|1|2|A|906
5IT9|1|2|U|907
5IT9|1|2|U|908
5IT9|1|2|C|909
5IT9|1|2|U|910
5IT9|1|2|U|911
5IT9|1|2|G|912
5IT9|1|2|G|913
5IT9|1|2|A|914
5IT9|1|2|U|915
5IT9|1|2|U|916
5IT9|1|2|U|917
5IT9|1|2|A|918

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein eS1

Chain F

Ribosomal protein uS7

Chain O

Ribosomal protein uS14

Chain a

Ribosomal protein eS26