HL_5IT9_027

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAUUGAGAGCUCU

Length

14 nucleotides

Bulged bases

5IT9|1|2|G|1242

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IT9|1|2|A|1235
5IT9|1|2|G|1236
5IT9|1|2|A|1237
5IT9|1|2|U|1238
5IT9|1|2|U|1239
5IT9|1|2|G|1240
5IT9|1|2|A|1241
5IT9|1|2|G|1242
5IT9|1|2|A|1243
5IT9|1|2|G|1244
5IT9|1|2|C|1245
5IT9|1|2|U|1246
5IT9|1|2|C|1247
5IT9|1|2|U|1248

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

Ribosomal protein uS19

Chain d

Ribosomal protein eS29

Chain f

Ribosomal protein eS31