HL_5IT9_031

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

5IT9|1|2|U|1396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT9_031 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.3594

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

5IT9|1|2|U|1394
5IT9|1|2|U|1395
5IT9|1|2|U|1396
5IT9|1|2|C|1397
5IT9|1|2|A|1398
5IT9|1|2|A|1399
5IT9|1|2|G|1400

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein eS17

Chain c

Ribosomal protein eS28

Chain g

Ribosomal protein RACK1