HL_5IT9_034

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

5IT9|1|2|G|1599

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT9_034 not in the Motif Atlas

Homologous match to HL_4V88_220

Geometric discrepancy: 0.2275

The information below is about HL_4V88_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5IT9|1|2|G|1592
5IT9|1|2|U|1593
5IT9|1|2|C|1594
5IT9|1|2|A|1595
5IT9|1|2|U|1596
5IT9|1|2|C|1597
5IT9|1|2|A|1598
5IT9|1|2|G|1599
5IT9|1|2|C|1600

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

Ribosomal protein uS9

Chain T

Ribosomal protein eS19

Chain U

Ribosomal protein uS10

Chain d

Ribosomal protein eS29