HL_5IT9_035

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGAUCUCGGCAACUCCAUCU*C

Length

22 nucleotides

Bulged bases

5IT9|1|2|G|1696, 5IT9|1|2|G|1697, 5IT9|1|2|C|1698, 5IT9|1|2|A|1699, 5IT9|1|2|A|1700, 5IT9|1|2|C|1701, 5IT9|1|2|U|1702, 5IT9|1|2|C|1703, 5IT9|1|2|C|1704, 5IT9|1|2|A|1705, 5IT9|1|2|U|1708

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IT9|1|2|G|1688
5IT9|1|2|A|1689
5IT9|1|2|G|1690
5IT9|1|2|A|1691
5IT9|1|2|U|1706
5IT9|1|2|C|1707
5IT9|1|2|U|1708
5IT9|1|2|C|1709
5IT9|1|2|G|1696
5IT9|1|2|G|1697
5IT9|1|2|C|1698
5IT9|1|2|A|1699
5IT9|1|2|A|1700
5IT9|1|2|C|1701
5IT9|1|2|U|1702
5IT9|1|2|C|1703
5IT9|1|2|C|1704
5IT9|1|2|A|1705
5IT9|1|2|U|1706
5IT9|1|2|C|1707
5IT9|1|2|U|1708
*
5IT9|1|2|C|1709

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Ribosomal protein eS6