HL_5IT9_039

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAGCCC

Length

7 nucleotides

Bulged bases

5IT9|1|i|C|6142, 5IT9|1|i|A|6143, 5IT9|1|i|G|6144, 5IT9|1|i|C|6145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81973.1

Basepair signature

cWW

Number of instances in this motif group

1

Unit IDs

5IT9|1|i|G|6141
5IT9|1|i|C|6142
5IT9|1|i|A|6143
5IT9|1|i|G|6144
5IT9|1|i|C|6145
5IT9|1|i|C|6146
5IT9|1|i|C|6147

Current chains

Chain i

Cricket paralysis virus IRES RNA

Nearby chains

Chain F

Ribosomal protein uS7

Chain Z

Ribosomal protein eS25