HL_5IT9_041

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUGAUCAGAUACCGU

Length

15 nucleotides

Bulged bases

5IT9|1|2|U|1003

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IT9|1|2|A|994
5IT9|1|2|U|995
5IT9|1|2|G|996
5IT9|1|2|A|997
5IT9|1|2|U|998
5IT9|1|2|C|999
5IT9|1|2|A|1000
5IT9|1|2|G|1001
5IT9|1|2|A|1002
5IT9|1|2|U|1003
5IT9|1|2|A|1004
5IT9|1|2|C|1005
5IT9|1|2|C|1006
5IT9|1|2|G|1007
5IT9|1|2|U|1008

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain O

Ribosomal protein uS14

Chain a

Ribosomal protein eS26