HL_5IT9_046

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCCUUGUGG

Length

9 nucleotides

Bulged bases

5IT9|1|2|U|718, 5IT9|1|2|U|719, 5IT9|1|2|U|721

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IT9|1|2|U|715
5IT9|1|2|C|716
5IT9|1|2|C|717
5IT9|1|2|U|718
5IT9|1|2|U|719
5IT9|1|2|G|720
5IT9|1|2|U|721
5IT9|1|2|G|722
5IT9|1|2|G|723

Current chains

Chain 2

18S ribosomal RNA

Nearby chains