HL_5IWA_008

3D structure

PDB id

5IWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with the GE81112 peptide antibiotic

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IWA_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0847

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5IWA|1|A|C|320
5IWA|1|A|A|321
5IWA|1|A|C|322
5IWA|1|A|U|323
5IWA|1|A|G|324
5IWA|1|A|A|325
5IWA|1|A|G|326
5IWA|1|A|A|327
5IWA|1|A|C|328
5IWA|1|A|A|329
5IWA|1|A|C|330
5IWA|1|A|G|331
5IWA|1|A|G|332
5IWA|1|A|G|333

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20