3D structure

PDB id
5J30 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S termination complex containing E. coli RF1
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAAACAUC
Length
8 nucleotides
Bulged bases
5J30|1|RA|A|196
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5J30_041 not in the Motif Atlas
Geometric match to HL_7RQB_006
Geometric discrepancy: 0.0491
The information below is about HL_7RQB_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06192.2
Basepair signature
cWW-tSH-F-F
Number of instances in this motif group
14

Unit IDs

5J30|1|RA|G|194
5J30|1|RA|A|195
5J30|1|RA|A|196
5J30|1|RA|A|197
5J30|1|RA|C|198
5J30|1|RA|A|199
5J30|1|RA|U|200
5J30|1|RA|C|201

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R1
50S ribosomal protein L28
Chain RP
50S ribosomal protein L15

Coloring options:


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