HL_5J30_049

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

5J30|1|RA|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J30_049 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.0591

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

5J30|1|RA|G|410
5J30|1|RA|G|411
5J30|1|RA|A|412
5J30|1|RA|C|413
5J30|1|RA|C|414
5J30|1|RA|A|415
5J30|1|RA|C|416
5J30|1|RA|C|417

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RP

50S ribosomal protein L15