HL_5J30_059

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

5J30|1|RA|A|781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J30_059 not in the Motif Atlas

Homologous match to HL_5J7L_156

Geometric discrepancy: 0.0396

The information below is about HL_5J7L_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

5J30|1|RA|U|779
5J30|1|RA|G|780
5J30|1|RA|A|781
5J30|1|RA|A|782
5J30|1|RA|A|783
5J30|1|RA|A|784
5J30|1|RA|G|785

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2