HL_5J30_125

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

5J30|1|XA|U|839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J30_125 not in the Motif Atlas

Homologous match to HL_6CZR_089

Geometric discrepancy: 0.2678

The information below is about HL_6CZR_089

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.1

Basepair signature

cWW-F

Number of instances in this motif group

51

Unit IDs

5J30|1|XA|G|838
5J30|1|XA|U|839
5J30|1|XA|C|840
5J30|1|XA|U|841
5J30|1|XA|C|848

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2