HL_5J30_138

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGG(MA6)(MA6)G

Length

6 nucleotides

Bulged bases

5J30|1|XA|G|1517

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J30_138 not in the Motif Atlas

Homologous match to HL_4LFB_032

Geometric discrepancy: 0.0512

The information below is about HL_4LFB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5J30|1|XA|C|1515
5J30|1|XA|G|1516
5J30|1|XA|G|1517
5J30|1|XA|MA6|1518
5J30|1|XA|MA6|1519
5J30|1|XA|G|1520

Current chains

Chain XA

16S rRNA

Nearby chains

Chain YA

Large subunit ribosomal RNA; LSU rRNA