HL_5J30_189
3D structure
- PDB id
- 5J30 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S termination complex containing E. coli RF1
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CG(PSU)AAC(5MU)A(PSU)AA(4OC)G
- Length
- 13 nucleotides
- Bulged bases
- 5J30|1|YA|A|1913, 5J30|1|YA|C|1914, 5J30|1|YA|A|1916
- QA status
- Modified nucleotides: PSU, 5MU, 4OC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J30_189 not in the Motif Atlas
- Homologous match to HL_7RQB_048
- Geometric discrepancy: 0.0686
- The information below is about HL_7RQB_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5J30|1|YA|C|1909
5J30|1|YA|G|1910
5J30|1|YA|PSU|1911
5J30|1|YA|A|1912
5J30|1|YA|A|1913
5J30|1|YA|C|1914
5J30|1|YA|5MU|1915
5J30|1|YA|A|1916
5J30|1|YA|PSU|1917
5J30|1|YA|A|1918
5J30|1|YA|A|1919
5J30|1|YA|4OC|1920
5J30|1|YA|G|1921
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XV
- Transfer RNA; tRNA
- Chain XY
- Peptide chain release factor 1
Coloring options: