HL_5J3C_008

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J3C_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0754

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5J3C|1|QA|C|320
5J3C|1|QA|A|321
5J3C|1|QA|C|322
5J3C|1|QA|U|323
5J3C|1|QA|G|324
5J3C|1|QA|A|325
5J3C|1|QA|G|326
5J3C|1|QA|A|327
5J3C|1|QA|C|328
5J3C|1|QA|A|329
5J3C|1|QA|C|330
5J3C|1|QA|G|331
5J3C|1|QA|G|332
5J3C|1|QA|G|333

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16

Chain QT

30S ribosomal protein S20