HL_5J3C_009

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5J3C|1|QA|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J3C_009 not in the Motif Atlas

Homologous match to HL_6CZR_080

Geometric discrepancy: 0.1661

The information below is about HL_6CZR_080

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

58

Unit IDs

5J3C|1|QA|C|342
5J3C|1|QA|U|343
5J3C|1|QA|A|344
5J3C|1|QA|C|345
5J3C|1|QA|G|346
5J3C|1|QA|G|347

Current chains

Chain QA

16S rRNA

Nearby chains

Chain RO

50S ribosomal protein L14

Chain RT

50S ribosomal protein L19