HL_5J3C_032

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

CGG(MA6)(MA6)G

Length

6 nucleotides

Bulged bases

5J3C|1|QA|G|1517

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J3C_032 not in the Motif Atlas

Homologous match to HL_4LFB_032

Geometric discrepancy: 0.0725

The information below is about HL_4LFB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5J3C|1|QA|C|1515
5J3C|1|QA|G|1516
5J3C|1|QA|G|1517
5J3C|1|QA|MA6|1518
5J3C|1|QA|MA6|1519
5J3C|1|QA|G|1520

Current chains

Chain QA

16S rRNA

Nearby chains

Chain RA

Large subunit ribosomal RNA; LSU rRNA