HL_5J3C_090

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J3C_090 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.1383

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5J3C|1|RA|G|2303
5J3C|1|RA|G|2304
5J3C|1|RA|A|2305
5J3C|1|RA|C|2306
5J3C|1|RA|G|2307
5J3C|1|RA|G|2308
5J3C|1|RA|A|2309
5J3C|1|RA|A|2310
5J3C|1|RA|A|2311
5J3C|1|RA|U|2312
5J3C|1|RA|C|2313

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RB

5S ribosomal RNA; 5S rRNA

Chain RG

50S ribosomal protein L5